Fig. 5

The figure shows the results of the MD simulation trajectory. The plots in figure A RMSF graphs of apo-PPARγ (Apo-P), taurine bound PPARγ (P–T) and homocysteine bound PPARγ (P–H), B RMSF graph of the PPARγ LBD and apo- and holo-forms with the four important helices involves in the activation and action of PPARγ. The cyan color in the graph represents Helix 3 (H3), the orange represents Helix 4/5 (H4/5), the blue represents Helix 11 (H11) and the purple color represents Helix 12 (H12) of PPARγ